禾谷炭疽菌中候选G蛋白偶联受体蛋白理化性质及遗传关系分析
DOI:
作者:
作者单位:

作者简介:

通讯作者:

中图分类号:

S763.1;S435.1

基金项目:

国家自然科学基金项目(面上项目,重点项目,重大项目)


Bioinformatics Analysis on Candidate G Protein-coupled Receptors in Colletotrichum graminicola
Author:
Affiliation:

Fund Project:

The National Natural Science Foundation of China (General Program, Key Program, Major Research Plan)

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    GPCR是G蛋白偶联受体的简称,作为一类具有七跨膜螺旋结构的重要细胞表面受体,对生物中细胞信号转导过程发挥着重要作用。然而,对于禾谷炭疽菌候选GPCR蛋白的理化性质及遗传关系尚不清楚,制约着对该菌致病机制的研究。本研究基于对禾谷炭疽菌中220个候选GPCR蛋白序列,利用SignalP 5.1、ProtParam和ProtScal等在线预测程序对上述蛋白中的信号肽、理化性质、疏水性进行明确,结果表明,禾谷炭疽菌中仅有7个含有信号肽的候选GPCR蛋白,理论等电点主要集中在大于6.01,多属于中性或碱性蛋白,均为疏水性蛋白,同时利用MEGA软件对上述蛋白的遗传关系进行解析,明确候选GPCR蛋白主要分为A、B、C三类,上述类别与其保守结构域有着密切关系。该研究为进一步开展禾谷炭疽菌GPCR蛋白功能解析提供了重要的理论支撑,也为其他炭疽菌中GPCR蛋白功能研究提供了重要的理论基础。

    Abstract:

    GPCR is the abbreviation of G protein coupled receptor. As a kind of important cell surface receptor with seven transmembrane helical structure, GPCR plays an important role in cellular signal transduction in biology. However, the physicochemical properties and genetic relationship of candidate GPCR proteins of Colletotrichum graminicola are not clear, which restricts the study of the pathogenic mechanism of this strain. In this study, based on the 220 candidate GPCR protein sequences of C. graminicola, the signal peptide, physicochemical properties and hydrophobicity of the above proteins were identified by online prediction programs such as SignalP5.1, ProtParam and ProtScal. The results showed that there were only 7 candidate GPCR proteins containing signal peptide, and the theoretical isoelectric points were mainly more than 6.01, most of which were neutral or basic proteins, all of which were hydrophobic proteins. At the same time, the genetic relationship of the above proteins was analyzed by MEGA software, and it was clear that the candidate GPCR proteins were mainly divided into A, B and C categories, which were closely related to their conserved domains. This study provides an important theoretical support for further functional analysis of GPCR protein of C. graminicola, and also provides an important theoretical basis for the study of the function of GPCR protein in other Colletotrichum species.

    参考文献
    相似文献
    引证文献
引用本文

喻红稠,韩长志. 禾谷炭疽菌中候选G蛋白偶联受体蛋白理化性质及遗传关系分析[J]. 科学技术与工程, 2021, 21(33): 14098-14105.
Yu Hongchou, Han Changzhi. Bioinformatics Analysis on Candidate G Protein-coupled Receptors in Colletotrichum graminicola[J]. Science Technology and Engineering,2021,21(33):14098-14105.

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:2021-03-09
  • 最后修改日期:2021-11-09
  • 录用日期:2021-08-26
  • 在线发布日期: 2021-11-23
  • 出版日期:
×
律回春渐,新元肇启|《科学技术与工程》编辑部恭祝新岁!
亟待确认版面费归属稿件,敬请作者关注