The rock mass is a complex geological body with the characteristics of discretion and heterogeneity, In this rock mass the characteristics of discretion and heterogeneity, the phenomenon of the pendulum-type wave will occur, which will easily lead to deep rock engineering disasters. According to the characteristics of discretion and heterogeneity of deep rock mass, the influence of the heterogeneity distribution of interlayer physical properties on the propagation of the pendulum-type wave is studied based on the block-hierarchical theory of deep rock mass. The influence of viscoelastic change of interlayer in the same region on the dynamic response of block in different regions and the influence of viscoelastic change of interlayer in different regions on the dynamic response of block in the same region are analyzed. According to the results,when the elasticity of the local weak interlayer decreases, the dynamic response of the block connected to the part is greatly affected by the elastic change, and the peak of acceleration increases. When the viscoelasticity of the interlayer of the same location changes, the influence of the block dynamic response before and after the location is different. The location of the viscoelastic change of the interlayer has an important influence on the propagation of the pendulum-type wave,the earlier the position of viscoelastic change is, the stronger the influence is on the dynamic response of block rock mass. Based on the above analysis results, the suggestion for guiding the deep rock mass engineering is proposed, which provide a reference for further study of discrete and heterogeneity complex deep rock mass dynamic phenomena.